clustered hits | time_effect | Omics-Datatype: PTX | Date-Time: 08_08_2024-17_25_27


Note!

Clustering of features that show significant changes over time (= hits).
Clustering was done based on the min-max normalized shape of the spline.
Right-click on any plot in this report to save it as a .svg (vector graphic) file!
If one level of the experiment is not shown, it means it has < 2 hits!

feature_name "formula": {annotation-column-x}_{annotation-column-y}_ ... :



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Report Info ℹ️

omics data type :PTX
data description :Old phosphoproteomics data with the missing two samples
data collection date :February 2024
meta condition :Phase
meta batch :Reactor,
limma design :~ 1 + Phase*X + Reactor
analyst name :Thomas Rauter
contact info :thomas.rauter@plus.ac.at
project name :DGTX
method description :NA
results summary :NA
conclusions :NA

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data with annotation :
meta :
limma topTables :
Enrichr clustered genes :
Enrichr background :

Table of Contents


Exponential

Spline-type: Natural cubic spline
DoF: 2
Knots: NA
Boundary-knots: NA

adj.p-value threshold: 0.050

Number of hits: 85


Overall Clustering

Plot

Plot

Min-max normalized individual and mean splines

Plot

Plot

Z-Score of log2 Value Heatmap

Plot

Individual Significant Features (Hits) Splines

Asterisks definition:
Adj. p-value < 0.05 --> *
Adj. p-value < 0.01 --> **
Adj. p-value < 0.001 --> ***

Cluster 1 | Hits: 52

28S ribosomal protein S18c
Plot

40S ribosomal protein S25
Plot

ADP-ribosylation factor-like protein 1
Plot

ADP-ribosylation factor-like protein 2-binding protein
Plot

ATP synthase F1 subunit delta
Plot

Aldehyde dehydrogenase
Plot

Alpha-tocopherol transfer protein-like
Plot

BRISC and BRCA1-A complex member 1
Plot

C2 tensin-type domain-containing protein
Plot

CDKN2A interacting protein
Plot

Calmodulin 2
Plot

Choline transporter-like protein
Plot

Core-binding factor subunit beta
Plot

Cytochrome c1, heme protein, mitochondrial
Plot

Double PHD fingers 2
Plot

Endoplasmin
Plot

Eukaryotic translation initiation factor 4E family member 2
Plot

Exopolyphosphatase PRUNE1 isoform X1
Plot

Farnesylated proteins-converting enzyme 2
Plot

GST C-terminal domain-containing protein
Plot

Glomulin isoform X3
Plot

H1.1 linker histone, cluster member
Plot

Holocytochrome c-type synthase
Plot

Importin 4
Plot

Malonyl-CoA-acyl carrier protein transacylase
Plot

Mediator of RNA polymerase II transcription subunit 27
Plot

Mitochondrial ribosomal protein S18A
Plot

Nuclear cap-binding protein subunit 3
Plot

Phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
Plot

Phospholipase A2
Plot

Pleckstrin homology domain containing A2
Plot

Protein S100-A10
Plot

Protein disulfide-isomerase A4
Plot

Protein phosphatase 6 regulatory subunit 3
Plot

Proton-coupled amino acid transporter 1
Plot

R3H domain containing 4
Plot

RNA polymerase II subunit A C-terminal domain phosphatase SSU72
Plot

Ribosomal protein L19
Plot

SPARC
Plot

Selenoprotein M
Plot

Sestrin-2
Plot

Small integral membrane protein 11A
Plot

Small ribosomal subunit protein uS15
Plot

Synaptophysin-like protein
Plot

TLE family member 3, transcriptional corepressor
Plot

Transmembrane protein 115
Plot

Transmembrane protein 131
Plot

Ubiquitin conjugating enzyme E2 N
Plot

Ubiquitin-like domain-containing protein
Plot

Voltage-gated potassium channel subunit beta-2
Plot

Zinc finger CCCH-type containing 18
Plot

vitamin-K-epoxide reductase (warfarin-sensitive)
Plot

Cluster 2 | Hits: 33

10 kDa heat shock protein, mitochondrial
Plot

14-3-3 protein epsilon
Plot

40S ribosomal protein S6
Plot

60S acidic ribosomal protein P0
Plot

60S ribosomal protein L29
Plot

ADP-ribosylation factor 4
Plot

Bifunctional purine biosynthesis protein ATIC
Plot

FAS-associated factor 1 isoform X2
Plot

Family with sequence similarity 168 member A
Plot

GTP-binding protein SAR1a
Plot

General receptor for phosphoinositides 1 associated scaffold protein
Plot

Geranylgeranyl diphosphate synthase 1
Plot

Glyceraldehyde-3-phosphate dehydrogenase
Plot

Heat shock cognate 71 kDa protein
Plot

Large ribosomal subunit protein eL33
Plot

Large ribosomal subunit protein eL34
Plot

Malate dehydrogenase
Plot

Molybdate-anion transporter
Plot

NAD(P)H dehydrogenase [quinone] 1
Plot

Peroxiredoxin-5
Plot

Phosphoserine aminotransferase
Plot

Pigment epithelium-derived factor isoform X2
Plot

Receptor expression-enhancing protein
Plot

Ribosomal protein L23a
Plot

Small ribosomal subunit protein uS10
Plot

Small ribosomal subunit protein uS13
Plot

Small ribosomal subunit protein uS3
Plot

T-complex protein 1 subunit eta
Plot

T-complex protein 1 subunit zeta
Plot

Transketolase
Plot

Ubiquitin-like domain-containing CTD phosphatase 1
Plot

phosphatidylinositol-3,4-bisphosphate 4-phosphatase
Plot

thioredoxin-disulfide reductase
Plot