clustered hits | time_effect | Omics-Datatype: PTX | Date-Time: 08_08_2024-17_25_27


Note!

Clustering of features that show significant changes over time (= hits).
Clustering was done based on the min-max normalized shape of the spline.
Right-click on any plot in this report to save it as a .svg (vector graphic) file!
If one level of the experiment is not shown, it means it has < 2 hits!

feature_name "formula": {annotation-column-x}_{annotation-column-y}_ ... :



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Report Info ℹ️

omics data type :PTX
data description :Old phosphoproteomics data with the missing two samples
data collection date :February 2024
meta condition :Phase
meta batch :Reactor,
limma design :~ 1 + Phase*X + Reactor
analyst name :Thomas Rauter
contact info :thomas.rauter@plus.ac.at
project name :DGTX
method description :NA
results summary :NA
conclusions :NA

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data with annotation :
meta :
limma topTables :
Enrichr clustered genes :
Enrichr background :

Table of Contents

Exponential

Spline-type: Natural cubic spline
DoF: 2
Knots: NA
Boundary-knots: NA

adj.p-value threshold: 0.050

Number of hits: 85

Overall Clustering

Plot
Plot

Min-max normalized individual and mean splines

Plot
Plot

Z-Score of log2 Value Heatmap

Plot

Individual Significant Features (Hits) Splines

Asterisks definition:
Adj. p-value < 0.05 --> *
Adj. p-value < 0.01 --> **
Adj. p-value < 0.001 --> ***

Cluster 1 | Hits: 52

28S ribosomal protein S18c
Plot
40S ribosomal protein S25
Plot
ADP-ribosylation factor-like protein 1
Plot
ADP-ribosylation factor-like protein 2-binding protein
Plot
ATP synthase F1 subunit delta
Plot
Aldehyde dehydrogenase
Plot
Alpha-tocopherol transfer protein-like
Plot
BRISC and BRCA1-A complex member 1
Plot
C2 tensin-type domain-containing protein
Plot
CDKN2A interacting protein
Plot
Calmodulin 2
Plot
Choline transporter-like protein
Plot
Core-binding factor subunit beta
Plot
Cytochrome c1, heme protein, mitochondrial
Plot
Double PHD fingers 2
Plot
Endoplasmin
Plot
Eukaryotic translation initiation factor 4E family member 2
Plot
Exopolyphosphatase PRUNE1 isoform X1
Plot
Farnesylated proteins-converting enzyme 2
Plot
GST C-terminal domain-containing protein
Plot
Glomulin isoform X3
Plot
H1.1 linker histone, cluster member
Plot
Holocytochrome c-type synthase
Plot
Importin 4
Plot
Malonyl-CoA-acyl carrier protein transacylase
Plot
Mediator of RNA polymerase II transcription subunit 27
Plot
Mitochondrial ribosomal protein S18A
Plot
Nuclear cap-binding protein subunit 3
Plot
Phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
Plot
Phospholipase A2
Plot
Pleckstrin homology domain containing A2
Plot
Protein S100-A10
Plot
Protein disulfide-isomerase A4
Plot
Protein phosphatase 6 regulatory subunit 3
Plot
Proton-coupled amino acid transporter 1
Plot
R3H domain containing 4
Plot
RNA polymerase II subunit A C-terminal domain phosphatase SSU72
Plot
Ribosomal protein L19
Plot
SPARC
Plot
Selenoprotein M
Plot
Sestrin-2
Plot
Small integral membrane protein 11A
Plot
Small ribosomal subunit protein uS15
Plot
Synaptophysin-like protein
Plot
TLE family member 3, transcriptional corepressor
Plot
Transmembrane protein 115
Plot
Transmembrane protein 131
Plot
Ubiquitin conjugating enzyme E2 N
Plot
Ubiquitin-like domain-containing protein
Plot
Voltage-gated potassium channel subunit beta-2
Plot
Zinc finger CCCH-type containing 18
Plot
vitamin-K-epoxide reductase (warfarin-sensitive)
Plot

Cluster 2 | Hits: 33

10 kDa heat shock protein, mitochondrial
Plot
14-3-3 protein epsilon
Plot
40S ribosomal protein S6
Plot
60S acidic ribosomal protein P0
Plot
60S ribosomal protein L29
Plot
ADP-ribosylation factor 4
Plot
Bifunctional purine biosynthesis protein ATIC
Plot
FAS-associated factor 1 isoform X2
Plot
Family with sequence similarity 168 member A
Plot
GTP-binding protein SAR1a
Plot
General receptor for phosphoinositides 1 associated scaffold protein
Plot
Geranylgeranyl diphosphate synthase 1
Plot
Glyceraldehyde-3-phosphate dehydrogenase
Plot
Heat shock cognate 71 kDa protein
Plot
Large ribosomal subunit protein eL33
Plot
Large ribosomal subunit protein eL34
Plot
Malate dehydrogenase
Plot
Molybdate-anion transporter
Plot
NAD(P)H dehydrogenase [quinone] 1
Plot
Peroxiredoxin-5
Plot
Phosphoserine aminotransferase
Plot
Pigment epithelium-derived factor isoform X2
Plot
Receptor expression-enhancing protein
Plot
Ribosomal protein L23a
Plot
Small ribosomal subunit protein uS10
Plot
Small ribosomal subunit protein uS13
Plot
Small ribosomal subunit protein uS3
Plot
T-complex protein 1 subunit eta
Plot
T-complex protein 1 subunit zeta
Plot
Transketolase
Plot
Ubiquitin-like domain-containing CTD phosphatase 1
Plot
phosphatidylinositol-3,4-bisphosphate 4-phosphatase
Plot
thioredoxin-disulfide reductase
Plot